How to choose which items are copied when using a custom template?

Hi,

As the title says, how do I select whether or not an item is copied to a new project when the project is created from a custom template?

I've recently created a custom template by following these instructions, as recommended after my last question on the forums:

Click

The template was created so that I can create multiple versions of a large LabVIEW program with unique names (using the prefix in the project options). It works very well except that a few things aren't copied to the new project even though they're part of the template. The most important "missing" item is for the runtime menu (i.e. an RTM file). Does anyone know why this might be missing? And how to make sure it's included in future?

Thanks for any help.